PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C0E4H
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 230aa    MW: 26492.5 Da    PI: 6.2786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C0E4HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
      Aradu.C0E4H 14 RGPWSPEEDTKLKEYIDKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-23565IPR009057Homeodomain-like
PROSITE profilePS5129420.971966IPR017930Myb domain
SMARTSM007172.8E-121364IPR001005SANT/Myb domain
PfamPF002496.8E-161462IPR001005SANT/Myb domain
SuperFamilySSF466892.53E-191588IPR009057Homeodomain-like
CDDcd001671.20E-81662No hitNo description
Gene3DG3DSA:1.10.10.602.6E-66687IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTKLKEYID KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSSL PFYQNQQQEQ QQALMSPMQQ YYPMFGSEGS  120
CSSSDGSCSH GGREMKKEEM GFHHHHMFHH HEEQQQQPMV VDDDGINNNN QWTEKLDKWL  180
FQTANPLDYD LEVIKQLVIS SSGNDGLFSV DENKTVQESK PIIYNYKYSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945875e-81BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935809.11e-104PREDICTED: uncharacterized protein LOC107461760
TrEMBLA0A059PSK59e-58A0A059PSK5_SALMI; MYB-related transcription factor
TrEMBLA0A151SAN11e-57A0A151SAN1_CAJCA; Transcription factor RAX3
STRINGGLYMA13G39760.16e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-54MYB family protein